PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G205700.1
Common NamePOPTR_0003s20470g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 525aa    MW: 58087.8 Da    PI: 6.7668
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G205700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.72.2e-11166222155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Potri.003G205700.1 166 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 222
                         57*******************5444.2455536655.779999**************98 PP

2AP247.25.6e-15267316355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Potri.003G205700.1 267 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 316
                         9***************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.70E-20166232No hitNo description
SuperFamilySSF541717.19E-15166232IPR016177DNA-binding domain
PfamPF008478.6E-9166222IPR001471AP2/ERF domain
SMARTSM003803.2E-23167236IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-12167231IPR001471AP2/ERF domain
PROSITE profilePS5103217.504167230IPR001471AP2/ERF domain
PRINTSPR003673.4E-6168179IPR001471AP2/ERF domain
CDDcd000182.40E-24265324No hitNo description
SuperFamilySSF541716.02E-18265325IPR016177DNA-binding domain
PROSITE profilePS5103219.375266324IPR001471AP2/ERF domain
SMARTSM003801.6E-32266330IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-18266324IPR001471AP2/ERF domain
PfamPF008471.4E-9267316IPR001471AP2/ERF domain
PRINTSPR003673.4E-6306326IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MNSNNWLSFP LSPTHPSLPA HLHASHPHQF SLGLVNDNME NPFQTQEWSL LNTHQGNNEV  60
PKVADFLGVS KSENQSDLVA FNEIQANESD YLFSNNSLVP VQNAVVGATN TFEFQENASN  120
LQSLTLSMGS ASGKGSTCEP SGDNSTNTVE AAAPRRTLDT FGQRTSIYRG VTRHRWTGRY  180
EAHLWDNSCR REGQSRKGRQ GGYDKEEKAA RAYDLAALKY WGTSTTTNFP ISNYEKEIEE  240
MKHMTRQEFV ASIRRKSSGF SRGASMYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTE  300
EEAAEAYDIA AIKFRGLNAV TNFDMNRYDV KSILESNTLP IGGGAAKRLK EAQAIESSRK  360
REEMIALGSS FPYGSTSSSS RLQAYPLMQT PFEQPQPLLT LQNQDISQYT QDSSSFHQNF  420
LQTQLHLHQQ STGSNFLHNQ SNQNPQYYNS YIQNNPALLH GFTGGYLGNG LGMASNSTGS  480
NAVGSAEELA LVKVDYDMPS SGYGSWSGDS VQGSNPGVFT MWNE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164090.0AC216409.1 Populus trichocarpa clone POP024-J08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303888.10.0ovule development family protein
SwissprotQ5YGP70.0PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2
TrEMBLB9GW950.0B9GW95_POPTR; Ovule development family protein
STRINGPOPTR_0003s20470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49423152
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.10.0AP2 family protein